Open access protocol and classification of scientific literature on spirometry
Flores-Valadez, Mario Arturo1; Michán-Aguirre, Layla2; Muñoz-Velasco, Israel2; Romero-Pérez, Minerva2
Flores-Valadez, Mario Arturo1; Michán-Aguirre, Layla2; Muñoz-Velasco, Israel2; Romero-Pérez, Minerva2
ABSTRACT
Health personnel who perform lung function tests must be well informed about specialized literature to use the equipment, interpret the results, and establish a diagnosis for monitoring lung diseases. Spirometry is the most widely used lung function test, which is why it is essencial to train technical and health personnel for its correct performance. The objective of this research is to create a protocol to organize and classify the technical and research literature on spirometry, allowing fast and efficient processing for both humans and machines. To achieve our objective, semantic annotations were made in 96 specialized documents on spirometry, with 99 tags categorized into seven key variables analyzed: type of document, access, topic, tests associated with spirometry, stage involved in performing spirometry, functional patterns and diseases studied through. These annotations are available online, are open access, semantic and interoperable, and can be processed by both humans and computers on a user-friendly platform (https://web.hypothes.is/). Due to the characteristics of the annotations, physicians and technicians who perform spirometry can interact with them and other users, thus promoting the analysis of key health information in an open and social manner, which can be useful for practice, research and teaching of pulmonology.KEYWORDS
Data, hypothes.is, semantic web, spirometry.REFERENCES
Graham BL, Steenbruggen I, Miller MR, Barjaktarevic IZ, Cooper BG, Hall GL, et al. Standardization of spirometry 2019 update. An Official American Thoracic Society and European Respiratory Society Technical Statement. Am J Respir Crit Care Med. 2019;200(8):e70-e88. Available from: https://www.atsjournals.org/doi/10.1164/rccm.201908-1590ST
Culver BH, Graham BL, Coates AL, Wanger J, Berry CE, Clarke PK, et al.; ATS Committee on proficiency standards for pulmonary function laboratories. Recommendations for a standardized pulmonary function report. An Official American Thoracic Society technical statement. Am J Respir Crit Care Med. 2017;196(11):1463-1472. Available from: https://www.atsjournals.org/doi/10.1164/rccm.201710-1981ST
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Ishizumi A, Kolis J, Abad N, Prybylski D, Brookmeyer KA, Voegeli C, et al. Beyond misinformation: developing a public health prevention framework for managing information ecosystems. Lancet Public Health. 2024;9(6):e397-e406. Available from: https://linkinghub.elsevier.com/retrieve/pii/S2468266724000318
Tabla 1: Siete variables y 99 etiquetas semánticas utilizadas para analizar la literatura científico-técnica sobre espirometría en Hypothes.is. |
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Dimensiones |
Variables |
Anotación |
Equipo |
Tipo de prueba (texto) |
TipoDePrueba/mesh/D002000/ForcedSpirometry TipoDePrueba/mesh/D008451/MaximalVoluntaryVentilation TipoDePrueba/mesh/D000089142/FractionalExhaledNitricOxideTesting TipoDePrueba/mesh/D010993/PlethysmographyWholeBody TipoDePrueba/mesh/D000072277/MaximalRespiratoryPressures TipoDePrueba/mesh/000070857/WalkTest TipoDePrueba/mesh/D011653/PulmonaryDiffusingCapacity TipoDePrueba/mesh/D000403/AirwayResistance TipoDePrueba/mesh/D001985/BronchialProvocationTests TipoDePrueba/mesh/D001784/BloodGasAnalysis |
Tipo de documento (etiqueta) |
spar/fabio/JournalArticle spar/fabio/ResearchPaper spar/fabio/Book spar/fabio/InstructionManual |
|
Tipo de acceso (etiqueta) |
acceso/abierto acceso/cerrado |
|
Tema (texto) |
Tema/mesh/D012137/RespiratorySystem Tema/mesh/D058007/PhysiciansPrimaryCare Tema/mesh/D012890/Sleep Tema/mesh/D010372/Pediatrics Tema/mesh/D013909/Thorax Tema/mesh/D017216/Telemedicine Tema/mesh/D006666/HistoryOfMedicine Tema/mesh/D004389/DurableMedicalEquipment Tema/mesh/D001185/ArtificialIntelligence Tema/mesh/D012016/ReferenceValues Tema/mesh/D000086382/COVID19 |
|
Procedimiento |
Etapa de la prueba (texto) |
EtapaPrueba/Operativa EtapaPrueba/Estandar EtapaPrueba/Interpretacion EtapaPrueba/Clinica |
Patrón funcional de la prueba (texto) |
PatronFuncional/Obstruccion PatronFuncional/PosibleRestriccion PatronFuncional/PosibleMixto PatronFuncional/Normal PatronFuncional/Broncodilatacion PatronFuncional/NoBroncodilatacion PatronFuncional/RestriccionSimple PatronFuncional/RestriccionCompleja PatronFuncional/TrastornoMixto PatronFuncional/VolumenesNormales PatronFuncional/Hiperinflacion PatronFuncional/PulmonesGrandes PatronFuncional/AumentoFlujoSanguineo PatronFuncional/AnormalidadVascularPulmonar PatronFuncional/PerdidaVolumenLocalizada PatronFuncional/PerdidaAlveoloCapilar PatronFuncional/DifusionNormal PatronFuncional/ImpedanciaNormal PatronFuncional/ObstruccionViaAereaPequeña PatronFuncional/ObstruccionViaAereaTotal PatronFuncional/AlteracionReactancia PatronFuncional/BajaInflamacionEosinofilica PatronFuncional/ModeradaInflamacionEosinofilica PatronFuncional/AltaInflamacionEosinofilica PatronFuncional/NegativoDCP PatronFuncional/PositivoDCP PatronFuncional/InspiracionMaximaNormal PatronFuncional/InspiraciónMaximaAlterada PatronFuncional/EspiracionMaximaNormal PatronFuncional/EspiracionMaximaAlterada PatronFuncional/RetoBronquialPositivo PatronFuncional/RetoBronquialNegativo PatronFuncional/Normoxemia PatronFuncional/Hipoxemia PatronFuncional/AcidosisRespiratoria PatronFuncional/AcidosisMetabolica PatronFuncional/AlcalosisRespiratoria PatronFuncional/AlcalosisMetabolica |
|
Enfermedad |
Enfermedad (texto) |
Enfermedad/mesh/D001249/Asthma Enfermedad/mesh/D001987/Bronchiectasis Enfermedad/mesh/D001991/Bronchitis Enfermedad/mesh/D000086382/COVID19 Enfermedad/mesh/D002925/PrimaryCiliaryDyskinesia Enfermedad/mesh/D029424/ChronicObstructivePulmonaryDisease Enfermedad/mesh/D017563/InterstitialLungDisease Enfermedad/mesh/D003550/CysticFibrosis Enfermedad/mesh/D001997/BronchopulmonaryDysplasia Enfermedad/mesh/D009468/NeuromuscularDisease Enfermedad/mesh/D017564/RadiationPneumonitis Enfermedad/mesh/D011009/Pneumoconiosis Enfermedad/mesh/D011649/PulmonaryAlveolarProteinosis Enfermedad/mesh/D013121/SpinalCurvatures Enfermedad/mesh/D012600/Scoliosis Enfermedad/mesh/D054990/IdiopathicPulmonaryFibrosis Enfermedad/mesh/D000081029/PulmonaryArterialHypertension Enfermedad/mesh/D006469/Hemoptysis Enfermedad/mesh/D011655/PulmonaryEmbolism Enfermedad/mesh/D012891/SleepApneaSyndrome Enfermedad/mesh/D008175/LungNeoplasm Enfermedad/mesh/D011656/PulmonaryEmphysema Enfermedad/mesh/D011014/Pneumonia Enfermedad/mesh/D014376/Tuberculosis Enfermedad/mesh/D019896/Alfa1AntitripsinDeficiency Enfermedad/mesh/D011015/PneumoniaAspiration Enfermedad/mesh/D015615/CysticAdenomatoidMalformationLung Enfermedad/mesh/D000092122/BronchiolitisObliteransSyndrome Enfermedad/mesh/D012130/RespiratoryHypersensitivity Enfermedad/mesh/D012829/Silicosis |